I feel so sorry for Bones. Regardless of whatever love she may have realized this summer and has subsequently been denied, Bones has also lost her best friend. Booth doesn't joke with her, doesn't support her, doesn't seem to even like her as a person, a colleague. He is not the same person we've all come to love.
I keep hoping she will open up to someone, have a shoulder to cry on: Russ, her dad, or maybe Andrew.