1. How did Kakashi obtain the mangekyon sharingan?
2. Where is Kabuto? What is he planning? has Orochimaru's DNA completely taken over his body?
3. What powers did Itachi choose to give Naruto?
4. When is Samui's team going to reach Konoha with the request from Raikage?
4.5 Raikage: "In addition I want you to make arrengements for a summit of the five kages"
5. Where is Killerbee/the Eight-tailed now?
6. Is Sasuke really going to attack Konoha and Kill the elders?
7. When will Danzo and root make their move agains Tsunade?
8. What does the citizens of Konoha do now with their village destroyed?
9. Is Kakashi dead or alive?
10. What will Naruto do with the info he received from the 4th hokage about Madara leading the attack on Konoha sixteen years ago?
11. How will Madara react to Pain/Nagato's Failure of capturing Naruto?
12. What will happen between Naruto and Hinata now that she has confessed her love for Naruto?
That's all I could think of :S if you have any unanswered questions so please post them so that I can add them to my list..