Shinji: (breaking into Unit 00's Entry Plug) Ayanami! Are you all right?! Ayanami! (Rei opens her eyes and looks at Shinji) Shinji: (tearing up) Don't ever say that, don't say that you have nothing else, just don't say that. And don't say goodbye when you leave on a mission, it's just too sad. Rei: Why are you crying? (Shinji is still shaking) Rei: I'm very sorry, but I don't know how to express myself in situations like this. Shinji: (looking up, eyes full of tears) Why don't you just try smiling? (Rei looks at Shinji and tires to recall... The corners of her mouth finally curve upwards and she is seen smiling for the first time in the series...)
Japanese Title: 「決戦、第3新東京市」- ("Kessen, Daisan Shin Tōkyō-shi") - "Showdown in Neo Tokyo 3"
The destruction of the forest is reused footage from the "Nadia: The Secret of Blue Water" episode "The Tower of Babel".
Note that Shinji is being boiled alive in LCL in the entry plug when the Angel fires at him. This also causes the oxygen in the fluid to come out of solution (see the bubbles!).
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