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Savage Opress takes his revived and half cyborg brother, Darth Maul, to hunt down their enemy, Obi-Wan Kenobi. Finally Darth Maul will have his vengeance for his horrible disfiguring. Mother Talzin cures Darth Maul of some of his madness, but he maintains the rage that drives him after the Jedi.
The Sith brothers and their criminal allies attack Mandalore and the Death Watch pretends to defeat them, causing the gullible people to choose Pre Vizla's rule over Duchess Satine's.
While Anakin still recovers in the Lurmen village, seperatist forces arrive to test a new prototype weapon on the defenseless Lurmen people.
The Jedi and their clones must defend their peaceful hosts, who refuse to take up arms themselves.
Count Dooku attempts to recruit specialists for his plot to kidnap and hold hostage the Chancellor of the Republic using an obstacle course called "The Box." Obi-wan Kenobi enters the lethal obstacle course while disguised as a bounty hunter.
Supreme Chancellor Palpatine goes to Naboo guarded by Jedi Knights. Meanwhile, Cad Bane, a still-disguised Obi-Wan and a pack of bounty hunters put their plan into action, but fails when Obi-Wan alerts the Jedi. With the Bounty Hunters in Republic Custody Obi-Wan wants to change back to his original self.
After a large battle between the Battle Droids and the Clone Troopers, Anakin and his new padawan, Ahsoka Tano, are recruited to save Jabba The Hutt's son.
Count Dooku and General Grievous descend upon the planet Dathomir to destroy the Nightsisters. Asaji Ventress strives to help repel the invasion and confronts Grievous in single combat but is ultimately unable to do much more about the massacre than to try and survive it.
Death Watch, Savage Opress and Darth Maul join forces over their shared hatred on Obi-Wan.
Obi-wan Kenobi stages his death in order to go undercover in a prison to search for information about an upcoming plot to kidnap the Chancellor and extort the Republic. Meanwhile, Anakin Skywalker begins hunting the man that he believes to be responsible for Kenobi's death.
Asajj Ventress, now living without purpose, joins Boba Fett's group of bounty hunters on a dangerous job delivering a mysterious chest to the planet Quarzite.
When General Grievous attacks Hondo's camp, Ahsoka and the younglings help the pirates defend it.
After endlessly wandering through the desert Col. Gascon and D-Squad have found a small populated city on Abafar. Their only hope of escaping the planet and fulfilling their mission lies with a lone Clone Trooper who suffers from amnesia and works as a dish washer.
The people of Onderon have decided to revolt against the Separatists, leading to a full scale revolt between the Rebels and Battle Droids.
Savage Opress, the brother of Darth Maul, gets word that Maul may possibly still be alive and hiding out on the planet Lotho Minor in the Outer Rim. Casually known as Junk World, the planet is an intergalactic dumping ground. Junkers live in the tunnels beneath the waste and are said to have the ability to create cyborgs out of the injured.moreless
Hondo's pirates attack the youngling's ship returning from Illum.
The younglings attempt to rescue Ahsoka from the pirates.
The Onderon rebels take over the capital and carry out a series of attacks in the city. The rebels choose a new leader despite their Separatist-aligned King's attempt to deal with the increasing rebellion.
The Jedi Cruiser that the D-squad have boarded is discovered to be crewless and filled with Rhydonium to destroy a Republic space station.
The former King of Onderon is kidnapped from the Rebels and is going to be excecuted by the Droid General and the current king of Onderon. With no help from the Republic, Ahsoka, Steela, and Lux Bonteri devise a plan to retrieve the King and Steela's brother from the Palace. The rescue succeeds after Ahsoka's intervention. Now knowing the Jedi's involvement, Dooku grows impatient with his underlings.
Anakin Skywalker, along with his Padawan and Captain Rex travel to Onderon, a planet under CIS control, and hope to train Rebels that live there in order to take back Iziz.
Ahsoka escorts a group of younglings to Ilum, where they will learn from Yoda and undergo a crucial rite-of-passage: the construction of their lightsabers. They grapple with both physical and inner challenges as they face the dangerous task ahead of them.
While on their way back home, C-3PO and R2-D2 find themselves in a Separatist attack, and they are forced to escape in a Y-wing fighter. What follows is a unique series of harrowing adventures for the two droids.
After the Mid Rim planet of Aleen is devastated by catastrophic earthquakes, a Jedi transport containing R2-D2 and C-3PO is sent to the planet to provide desperately needed humanitarian relief.
An intercepted encrypted message by General Grievous troubles the Jedi Council. A group of droids, R2-D2 among them, is sent to ifiltrate a Seperatist ship to steal its encryption module.
After successfully stealing the desired encryption module under the leadership of Colonel Meebur Gascon, D-Squad escapes into hyperspace. Navigating their ship into a field of icy comets and suffering damage, the droids are forced to crash-land on the nearby desert world of Abafar, where their chances of survival seem slim.