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After endlessly wandering through the desert Col. Gascon and D-Squad have found a small populated city on Abafar. Their only hope of escaping the planet and fulfilling their mission lies with a lone Clone Trooper who suffers from amnesia and works as a dish washer.
After successfully stealing the desired encryption module under the leadership of Colonel Meebur Gascon, D-Squad escapes into hyperspace. Navigating their ship into a field of icy comets and suffering damage, the droids are forced to crash-land on the nearby desert world of Abafar, where their chances of survival seem slim.
An intercepted encrypted message by General Grievous troubles the Jedi Council. A group of droids, R2-D2 among them, is sent to ifiltrate a Seperatist ship to steal its encryption module.
When General Grievous attacks Hondo's camp, Ahsoka and the younglings help the pirates defend it.
The younglings attempt to rescue Ahsoka from the pirates.
Hondo's pirates attack the youngling's ship returning from Illum.
Yoda and Ahsoka travel to Illum with younglings to teach them how to make their own lightsabers.
The Onderon rebels take over the capital and carry out a series of attacks in the city. The rebels choose a new leader despite their Separatist-aligned King's attempt to deal with the increasing rebellion.