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This episode's bad guys are based on a real terrorist organisation called Jemaah Islamiya. JI is, in a sense, the Asian branch of Al-Qaeda.
After the third commercial break, TC4771 is shown flying over land with two F16s following directly behind. Immeditaely after, the radar is shown with both F16s approaching the stolen plane from the sea in a perpendicular fashion.
In one scene Stern signed to the camera and was translated by the actor "behind" her, but there was no way he could have seen her hand gestures.